Filter for specific ambiguous sites before downsampling

virus-evolution / phylopipe

Pipeline to build a massive tree from global data

GNU General Public License v3.0

10 stars 0 forks source link

Filter for specific ambiguous sites before downsampling #17

Closed rmcolq closed 3 years ago

rmcolq commented 3 years ago

Remove sequences with ambiguous bases at sites 8782, 28144, 3037, 14408, 24303, 28881-28883, 1059, 25563 before downsampling and splitting fasta for tree building