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virusseq
/
metadata-schemas
Repo to host Virus-seq metadata schemas defined using JSON Schema
GNU Affero General Public License v3.0
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first commit
#40
edsu7
opened
1 month ago
0
Converting ph4ge waste water schema to lectern
#39
edsu7
opened
1 month ago
1
Purpose of sequencing chronic infection
#34
edsu7
closed
5 months ago
0
add `Pharynx (throat)` to `anatomical_part`
#33
edsu7
closed
8 months ago
0
update sample_collected_by and sequence_submitted_by as requested
#32
lindaxiang
closed
10 months ago
0
Support blank
#31
lindaxiang
closed
1 year ago
0
Feature request for depth and breadth of coverage columns in the schema
#30
nithujohn
closed
1 year ago
2
add additional fields
#29
lindaxiang
closed
1 year ago
1
Update consensus_sequence.json
#28
edsu7
closed
2 years ago
0
Update Schema from enum to array of enum for anatomical_Part
#27
ghost
closed
2 years ago
4
Update Schema from enum to array of enum for PurposeofSequencing
#26
ghost
closed
2 years ago
4
add new lab name to sample_collected_by
#24
lindaxiang
closed
2 years ago
0
Sample Collected date is one day offset earlier/before the user-provided date
#23
ghost
closed
2 years ago
1
Metadata Schema update- "sample collected by"
#22
nithujohn
closed
2 years ago
3
add Shared Hospital Laboratory to sample_collected_by
#21
lindaxiang
closed
2 years ago
0
update purpose_of_sequencing cv
#20
lindaxiang
closed
2 years ago
0
update cv terms
#19
lindaxiang
closed
2 years ago
0
sync purpose of sequencing cv terms with DataHarmonizer
#18
lindaxiang
closed
2 years ago
0
Change metadata schema for sample collection date
#17
nithujohn
opened
2 years ago
5
add cross check between age and age_bin
#16
lindaxiang
closed
2 years ago
0
Add arranger exports
#15
jaserud
closed
2 years ago
0
add age 90+ validation
#14
lindaxiang
closed
2 years ago
0
change schema to reflect new age bins
#13
nknox
closed
2 years ago
1
add support to 100%
#12
lindaxiang
closed
3 years ago
0
add regex pattern for fasta_header_name
#11
lindaxiang
closed
3 years ago
0
fix some bugs
#10
lindaxiang
closed
3 years ago
0
address request updates
#9
lindaxiang
closed
3 years ago
1
Requested Updates to Schema: August 2021
#8
rosibaj
closed
3 years ago
0
correct the apostrophe display
#7
lindaxiang
closed
3 years ago
0
update song schema, example payload and tsv template
#6
lindaxiang
closed
3 years ago
0
Add new fields
#5
lindaxiang
closed
3 years ago
0
schema update
#4
lindaxiang
closed
3 years ago
5
Schema update: change any date or number (long, int, etc) can NOT have an alternate ENUM when number is not provided
#3
akachru-github
closed
3 years ago
1
update fieldnames
#2
justincorrigible
closed
3 years ago
0
Add consensus_sequence schema
#1
lindaxiang
closed
3 years ago
0