virusseq / portal-ui

Canadian VirusSeq Data Portal
https://virusseq-dataportal.ca/
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QC sample update and supression #289

Closed GH-Emily closed 2 years ago

GH-Emily commented 2 years ago

Hi @sifavahora,

Could you please remove:

QC_235020 QC_235155 QC_291764 QC_287168 QC_287169 QC_287170

And could you please update collection dates for:

ID New collection date
QC_138109 2021-04-09
QC_155981 2021-05-11
QC_139914 2021-05-19
QC_139915 2021-05-19

Thanks!

ghost commented 2 years ago

Onhold, Until we get a confirmation from ViralAI to make changes to portal data. Currently holdong off anything that triggers a release.

Also could be related to https://github.com/cancogen-virus-seq/portal/issues/259 please check with @caravinci

GH-Emily commented 2 years ago

hi @sifavahora I believe these collection dates were off by a year, so wouldn't be a part of #259

ghost commented 2 years ago

Thanks @GH-Emily for this information. We will check again and get back to you.

ghost commented 2 years ago

@GH-Emily you are right, sorry about missing that. We will do as requested.

edsu7 commented 2 years ago

The following IDs have had their sample_collection_date changed:

QC_138109
QC_155981
QC_139914
QC_139915

As an example - Previously:

"analysisId": "41f1bf56-4177-4676-b1bf-564177967612",...
"submitterSampleId": "QC_155981",...
"sample_collection_date": "2020-05-11",...

Now:

"analysisId": "41f1bf56-4177-4676-b1bf-564177967612",...
"submitterSampleId": "QC_155981",...
"sample_collection_date": "2021-05-11",...
edsu7 commented 2 years ago

The following IDs have been suppressed:

QC_235155
QC_291764
QC_287168
QC_287169
QC_287170

As an example:

"analysisId": "6babf5d1-509e-4916-abf5-d1509e391683",...
"studyId": "LSPQ-QC",...
"analysisState": "SUPPRESSED",...
"submitterSampleId": "QC_287169",...

QC_235020 was not associated with existing analyses

GH-Emily commented 2 years ago

thank you!