virusseq / portal-ui

Canadian VirusSeq Data Portal
https://virusseq-dataportal.ca/
GNU Affero General Public License v3.0
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Setup the prerequisites for testing multiple tags for properties #296

Closed ghost closed 2 years ago

ghost commented 2 years ago
  1. Do we need to change anything in the templates or harmonizer?
  2. Have received a sample tsv with multiple tags for anatomical part, need to create a fasta for the same and confirm the template format.
  3. Do we need anything else to test this? test_multi tags - Copy.tsv.txt
edsu7 commented 2 years ago

@lindaxiang could you sanity check this? Thanks test.fasta.gz

lindaxiang commented 2 years ago

@sifavahora @edsu7 The fasta file looks good to me. For metadata file test_multi tags - Copy.tsv.txt, here are what I found:

  1. sample collection date should have the format: "2022-05-01", I am not quite sure if Muse will do the format transformation? If it does, we are all good.
  2. host disease has value of COVID- 19(has a space in between) instead of COVID-19, which will report errors for song validation.
ghost commented 2 years ago

Thanks Linda. I can make that changes.