virusseq / portal-ui

Canadian VirusSeq Data Portal
https://virusseq-dataportal.ca/
GNU Affero General Public License v3.0
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Suppress samples- QC #331

Closed ChanchalYa closed 1 year ago

ChanchalYa commented 1 year ago

Hi there @sifavahora,

Could you please suppress these samples (attached) in VirusSeq? These were submitted twice, resulting in duplicate copies.

Thanks, Chanchal QC_samples_to_suppress_VirusSeq_20220920.csv

edsu7 commented 1 year ago

Hi @ChanchalYa ,

Were these duplicates submitted under the same specimen_collect_sample_id or different?

ChanchalYa commented 1 year ago

Hi @edsu7 ,

These were submitted under different specimen_collector_sample_id

edsu7 commented 1 year ago

56 samples have suppressed.

Example below:

  "analysisStateHistory": [
    {
      "initialState": "UNPUBLISHED",
      "updatedState": "PUBLISHED",
      "updatedAt": "2022-08-30T16:58:09.367691"
    },
    {
      "initialState": "PUBLISHED",
      "updatedState": "SUPPRESSED",
      "updatedAt": "2022-09-20T19:06:14.983656"
    }
],
      "submitterSampleId": "QC_497203",

The following specimen_collector_sample_id did not have analyses

QC_497201
QC_497204
QC_497249
QC_497335
ChanchalYa commented 1 year ago

thanks @edsu7

edsu7 commented 1 year ago
QC_497201
QC_497204
QC_497249
QC_497335

have been located and suppressed.

{
  "analysisId": "1a272f71-08b6-4fd6-a72f-7108b6dfd6b0",
  "studyId": "LSPQ-QC",
  "analysisState": "SUPPRESSED",
      "donor": {
        "studyId": "LSPQ-QC",
        "submitterDonorId": "QC_497249"
ChanchalYa commented 1 year ago

Thanks very much @edsu7