virusseq / portal-ui

Canadian VirusSeq Data Portal
https://virusseq-dataportal.ca/
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Accidental duplicate sample upload 2023-10-05 #416

Closed KirstenPalmier closed 11 months ago

KirstenPalmier commented 12 months ago

Good afternoon @edsu7 ,

I accidentally uploaded the wrong DP submission file earlier today. Is it possible to remove the following samples with the submission date as today (2023-10-05)?

Specimen collector sample ID
SK_640645
SK_640646
SK_640653
SK_640652
SK_640649
SK_640648
SK_640647
SK_640656
SK_640650
SK_640659
SK_640657
SK_640655
SK_640661
SK_641550
SK_641553
SK_641551
SK_641552
SK_641554
SK_641558
SK_641557
SK_641556
SK_641560
SK_641561
SK_641562
SK_641559

Thank you!

Kirsten

KirstenPalmier commented 11 months ago

Good morning @edsu7 ,

Just checking in on the status of this request. Thanks!

Kirsten

lindaxiang commented 11 months ago

@KirstenPalmier Edmund is on vacation and I am sorry for getting back to you with delay!

I took a closer look at the above records you've requested to remove, it seems that all of them do not have duplicates in the system. However I do find the following 30 Specimen collector sample ID which have duplicated records been re-submitted on Oct-05, 2023.

SK_639638
SK_639639
SK_639640
SK_639641
SK_639642
SK_639643
SK_639644
SK_639645
SK_639646
SK_639647
SK_639648
SK_639649
SK_639650
SK_639653
SK_639654
SK_639655
SK_639656
SK_639657
SK_639658
SK_639659
SK_639660
SK_639661
SK_639662
SK_639665
SK_639666
SK_639667
SK_639668
SK_639669
SK_639670
SK_639671

Could you please cross check your records and let me know if these 30 samples were accidentally re-submitted on Oct05. If they are duplicates, I can help to remove them.

Cheers, Linda

KirstenPalmier commented 11 months ago

Hi @lindaxiang,

Thank you for getting back to me!

You are correct, the sample IDs you have listed above are the correct duplicates I would like removed. I accidentally re-submitted them while training for data portal submissions!

Thank you for your patience and help,

Kirsten

lindaxiang commented 11 months ago

@KirstenPalmier the following duplicated samples have been removed from the portal.

2dfb3004-cda9-42c5-bb30-04cda902c50a    SK_639638       2023-10-05T17:40:01.035414
aabe910d-caaa-4414-be91-0dcaaaf414ca    SK_639639       2023-10-05T17:40:01.191226
ec1b8684-ab50-49d6-9b86-84ab5049d6e2    SK_639640       2023-10-05T17:39:51.131864
523168ae-b298-46fd-b168-aeb29886fdbb    SK_639641       2023-10-05T17:39:51.741314
c4059151-9cd1-4bd2-8591-519cd15bd2cb    SK_639642       2023-10-05T17:39:50.403378
dfd063a9-6d46-44b1-9063-a96d4624b153    SK_639643       2023-10-05T17:39:51.061859
52c9b32f-1ded-494a-89b3-2f1ded694a40    SK_639644       2023-10-05T17:39:51.028113
f19792c3-4b46-4d78-9792-c34b460d78eb    SK_639645       2023-10-05T17:39:51.152378
17607e13-733a-4325-a07e-13733a2325e2    SK_639646       2023-10-05T17:39:50.362637
1c305992-f11a-4978-b059-92f11aa9786b    SK_639647       2023-10-05T17:39:51.078791
37a738fb-0b9a-4b63-a738-fb0b9a5b63ee    SK_639648       2023-10-05T17:39:50.949411
c96ff0ce-d9d0-4a0b-aff0-ced9d09a0b16    SK_639649       2023-10-05T17:39:50.423933
3376ee64-abc7-41ef-b6ee-64abc731ef61    SK_639650       2023-10-05T17:39:51.634904
1f4a110b-55b3-487c-8a11-0b55b3087ce4    SK_639653       2023-10-05T17:39:50.379524
0244914f-b59e-494b-8491-4fb59e294bfc    SK_639654       2023-10-05T17:39:50.378475
90aa5820-990d-4079-aa58-20990dd079d3    SK_639655       2023-10-05T17:39:50.388883
98798de2-2e87-4e2d-b98d-e22e870e2d4f    SK_639656       2023-10-05T17:39:51.0342
d9d7c7fc-0757-4f2a-97c7-fc07573f2aaf    SK_639657       2023-10-05T17:39:51.130656
1159d6ca-8819-4154-99d6-ca8819215446    SK_639658       2023-10-05T17:40:00.830404
33988fdb-dc6d-41b9-988f-dbdc6d41b927    SK_639659       2023-10-05T17:40:00.941346
2a4d240e-f395-403f-8d24-0ef395d03f1e    SK_639660       2023-10-05T17:40:00.960075
a538656d-e003-4cfc-b865-6de0038cfc58    SK_639661       2023-10-05T17:39:50.389279
336e313c-0f76-4c30-ae31-3c0f76bc304e    SK_639662       2023-10-05T17:39:51.159005
c042b14a-e5a8-48ad-82b1-4ae5a858adca    SK_639665       2023-10-05T17:39:51.664381
60e14271-6aab-4b29-a142-716aab0b29e3    SK_639666       2023-10-05T17:39:50.362316
13a7b996-e3ca-4d0d-a7b9-96e3ca5d0ddc    SK_639667       2023-10-05T17:39:50.405088
9d369777-6a9e-405c-b697-776a9ec05c3d    SK_639668       2023-10-05T17:39:51.707636
0f16e4e7-7778-48d8-96e4-e7777828d8b6    SK_639669       2023-10-05T17:39:50.414373
e18a56d9-c956-4fbf-8a56-d9c9561fbfe5    SK_639670       2023-10-05T17:39:51.716656
30470761-a93e-49f9-8707-61a93e69f9f7    SK_639671       2023-10-05T17:39:51.079879

Please verify and let me know if there're any additional issues. Thanks! Linda

KirstenPalmier commented 11 months ago

Thank you Linda,

Looks great!