Open Remi-Gau opened 2 years ago
Agreed Remi, in the first version we did a minimally BIDS compatible version. Right now we are working on a more comprehensive version, not for the synthetic datasets (which was the original use), but for the experimental datasets. We are creating another container called prfprepare. and we are editing prfanalyze to be compatible. Can you wait a couple of weeks? If you want to contribute we can have a small meeting and decide together (you have one opportunity this Wednesday at 11:00am Central European time, for example, please let me know) Thanks again for your interest! Gari
On Mon, Mar 14, 2022 at 3:38 PM Remi Gau @.***> wrote:
any reason why the BIDS session entity is REQUIRED in most "APIs"?
this seems like an extra constraint that would force some people extra data wrangling where as there are tools like pybids and or bids-matlab that can be used to query BIDS dataset to help create more flexible APIs.
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hey @garikoitz
thanks for the quick response
this can totally wait on my side: this was a more of a general comment on my side as a BIDS maintainer
won't be able to join on Wednesday
but I could join later to give you my 2 cents:
I see, thanks! we will look into it
On Tue, Mar 15, 2022 at 1:15 PM Remi Gau @.***> wrote:
hey @garikoitz https://github.com/garikoitz
thanks for the quick response
this can totally wait on my side: this was a more of a general comment on my side as a BIDS maintainer
won't be able to join on Wednesday
but I could join later to give you my 2 cents:
- I think that you can maybe get some inspirations from the BIDS extension (WIP) that tries to define the API of BIDS apps: https://docs.google.com/document/d/104HLZedFtx0TaXEUwd7eyWvJUlc0CcSUtCzwjNgmGxE/edit#heading=h.4k1noo90gelw
- depending on your needs, using bids-matlab could help... or not.
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Other things that exist in the BIDS world that you could align with:
bids-filter-file.json
used by fmriprep to tweak the behavior of what data needs to be ingestedconfig.json
: use an Input
key the way the BIDS stats model does it: https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M/edit#bookmark=id.8zbk1gw8ll6woh and of course those are just friendly suggestions: I have 0 idea how far down the road you are to those new features and how much flexibility you have regarding API definition.
any reason why the BIDS session entity is REQUIRED in most "APIs"?
this seems like an extra constraint that would force some people extra data wrangling where as there are tools like pybids and or bids-matlab that can be used to query BIDS dataset to help create more flexible APIs.