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vistalab / vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.
http://vistalab.stanford.edu
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Issue Initializing mrVista Session with Lucas Center Nifti #56

Closed aspanu closed 11 years ago

aspanu commented 11 years ago

From Harshad in Kalanit's lab:

"I am using niftiFromDicom which is part of the mrVista package to convert inplaneAnatomy & 3D to nifti. Can this be added to the existing code so that I don't have to do it explicitly each time? Also, we use spiral acquisition at the Lucas Center, and am using makenifti (written by Gary Glover) to convert to nifti. Is there any other tool you would recommend using to convert to proper nifti formats?"

aspanu commented 11 years ago

I think that this page may give you some more insight into the supported methods of using the Lucas Center:

http://vistalab.stanford.edu/newlm/index.php/Anatomical-Processing

As well - I have made a change in our code to be more forgiving of niftis that are not properly made. This means that after a pull request made later today #57, this should be fixed and mrVista should now show all slices.

aspanu commented 11 years ago

Now that the functionality has been extended, this issue can be closed.