vitessce vitessce-data issues

vitessce / vitessce-data

Utils for loading HuBMAP data formats

MIT License

6 stars 4 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump dask from 2.11.0 to 2021.10.0

#115 dependabot[bot] opened 2 years ago
0
add requirements.txt

#114 evanbiederstedt closed 4 years ago
0
Missing .zgroups in Spraggins preview?

#113 mccalluc opened 4 years ago
1
Try UMAP instead of PCA

#112 keller-mark opened 4 years ago
0
Re-add requirements.txt for pip adherents

#111 evanbiederstedt closed 4 years ago
1
Refactor for Packaging

#110 ilan-gold opened 4 years ago
1
Version bump

#109 keller-mark closed 4 years ago
0
Expression matrix zarr processing

#108 keller-mark closed 4 years ago
1
Update Linnarsson Name and Redeploy

#107 ilan-gold closed 4 years ago
0
Add a demo dataset with thousands of genes

#106 keller-mark opened 4 years ago
0
Fix issues with duplicated cell coordinates in the Linnarsson dataset

#105 keller-mark opened 4 years ago
0
Fix untar bug and python open() bug

#104 keller-mark closed 4 years ago
0
Cell type annotations as cells, factors, and cell-sets for showcase

#103 keller-mark closed 4 years ago
0
kebab-case cell-sets file suffix

#102 keller-mark closed 4 years ago
0
Render Layer Order

#101 ilan-gold closed 4 years ago
0
Use bioformats2raw to convert zarr images to ome-zarr

#100 manzt opened 4 years ago
0
Docs and conda

#99 keller-mark closed 4 years ago
3
Version bump

#98 keller-mark closed 4 years ago
5
Cell type annotations for spleen dataset using EBI Cell Ontology

#97 keller-mark closed 4 years ago
7
Reduce size of Linnarsson fake-data

#96 keller-mark opened 4 years ago
0
Cell annotations to factors

#95 keller-mark closed 4 years ago
1
Cell sets

#94 keller-mark closed 4 years ago
0
Add OMEXML "equivalent" for zarr based images

#93 manzt opened 4 years ago
0
Visual bug in zarr image

#92 ilan-gold closed 4 years ago
2
Merge metadata for spraggins images into single raster.json

#91 manzt closed 4 years ago
0
Migrate image data to raster schema proposal

#90 manzt closed 4 years ago
0
Code to generate spraggins.ome.tiff fixture?

#89 manzt closed 4 years ago
1
Raster data model proposal

#88 manzt closed 4 years ago
4
Colors for the raster data

#87 ilan-gold opened 4 years ago
1
format ./python with `black`

#86 manzt closed 4 years ago
4
Run black on ./python dir

#85 manzt closed 4 years ago
1
replace `gsutil mv` with `gsutil rsync`

#84 manzt closed 4 years ago
0
Update Spraggins

#83 ilan-gold closed 4 years ago
0
Push spraggins to google cloud

#82 manzt closed 4 years ago
1
Update url test and bump version

#81 ilan-gold closed 4 years ago
0
publish 0.0.23

#80 manzt closed 4 years ago
1
Uncomment test

#79 ilan-gold closed 4 years ago
0
citation for cytokit data?

#78 mccalluc opened 4 years ago
0
Read cytokit csv

#77 mccalluc closed 4 years ago
1
Color output

#76 mccalluc opened 4 years ago
1
pip install doesn't work on python 3.8

#75 mccalluc opened 4 years ago
0
Updaet schema outputs for vanderbilt

#74 ilan-gold closed 4 years ago
1
Fix URL

#73 ilan-gold closed 4 years ago
0
generate linnarsson zarr from hdf5 directly

#72 manzt closed 4 years ago
5
change ordering to mz,y,x and chunk for better spatial access

#71 manzt closed 4 years ago
1
IMS dataset should be [mz, y, x] not [mz, x, y] in ordering

#70 manzt closed 4 years ago
0
Vanderbilt Data

#69 ilan-gold closed 4 years ago
0
Add JSON for Spraggins IMS dataset

#68 manzt closed 4 years ago
1
Simply missing files might not be flagged in diff?

#67 mccalluc closed 4 years ago
1
Add IMS spraggins dataset

#66 manzt closed 4 years ago
2