vitessce / vitessce-python

Python API and Jupyter widget for Vitessce
https://python-docs.vitessce.io
MIT License
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Support SpatialData #286

Open keller-mark opened 1 year ago

keller-mark commented 1 year ago

User story

We want to support loading SpatialData objects, including local SpatialData objects.

Preferred solution

To do this, we need an analog of the AnnDataWrapper class but for SpatialData. This wrapper class allows us to:

Relevant code/documentation:

keller-mark commented 1 year ago

https://spatialdata.scverse.org/en/latest/tutorials/notebooks/datasets/README.html

keller-mark commented 9 months ago

Depends on https://github.com/vitessce/vitessce/pull/1728

keller-mark commented 7 months ago

We will also want to embed an example notebook in the documentation that demonstrates how to use the implementation. These notebooks are located at https://github.com/vitessce/vitessce-python/tree/main/docs/notebooks