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vitessce / vitessceAnalysisR

Data conversion helpers for data analysis with vitessceR
https://vitessce.github.io/vitessceAnalysisR/
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Support zarr formats natively #6

Open keller-mark opened 3 years ago

keller-mark commented 3 years ago

We need zarr support in R to be able to write expression matrices, and potentially to write hdf5 or other objects directly to zarr representations (like AnnData.write_zarr) See https://github.com/gdkrmr/zarr-R

There is also a lot of interest in other places https://github.com/zarr-developers/community/issues/18 https://spacetx-starfish.readthedocs.io/en/stable/help_and_reference/working_with_starfish_outputs/IntensityTable/#serialization

wolfganghuber commented 1 year ago

There is now the Rarr package by Mike Smith: https://github.com/grimbough/Rarr It's been submitted to Bioconductor and should pop up there sooner or later.