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vivarium-collective
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process-bigraph
Apache License 2.0
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Emitter config
#69
eagmon
closed
2 weeks ago
0
Processes need the ability to override the default `_apply` method from an update
#68
prismofeverything
closed
3 weeks ago
0
Schemas from outputs should take precedence for `_apply` key
#67
prismofeverything
closed
3 weeks ago
0
Support array type of unknown size?
#66
prismofeverything
opened
1 month ago
2
Add a slice method for processes that navigates through the process' ports
#65
prismofeverything
opened
1 month ago
0
Rename substates selectively using `_path`
#64
prismofeverything
opened
1 month ago
0
State emitter
#63
prismofeverything
opened
1 month ago
0
Enum type
#62
prismofeverything
closed
1 month ago
0
COMETS composite
#61
eagmon
closed
1 month ago
0
reregistering a process should be idempotent
#60
prismofeverything
opened
3 months ago
0
Make interactive glossary notebook to explain process bigraph
#59
prismofeverything
opened
4 months ago
0
Make a new step that will run a process until a certain condition is met
#58
prismofeverything
opened
4 months ago
0
Make plotting step, make a "run process" workflow that plots the timeseries
#57
prismofeverything
opened
4 months ago
0
Unfold the parameter scan so that everything is part of the same bigraph (with potential topological updates)
#56
prismofeverything
opened
4 months ago
0
Support dependencies that require all inputs to be triggered
#55
prismofeverything
opened
4 months ago
0
In emitter, first timestep is default, not initial value
#54
prismofeverything
closed
1 month ago
0
Emitter methods
#53
eagmon
opened
5 months ago
0
Provide emit key to Composite configuration describing the emitters for that composite
#52
prismofeverything
closed
3 weeks ago
2
Add builder api to composite?
#51
prismofeverything
opened
5 months ago
0
throw error if type is missing
#50
prismofeverything
opened
6 months ago
0
Local
#49
eagmon
closed
6 months ago
0
remove mongo emitter
#48
eagmon
closed
6 months ago
0
No global core in process-bigraph
#47
prismofeverything
closed
6 months ago
0
console and ram emitters need to be registered when core is initialized
#46
prismofeverything
closed
5 months ago
0
move DatabaseEmitter to its own repository
#45
prismofeverything
closed
5 months ago
0
process registry should be in the type system
#44
prismofeverything
closed
6 months ago
1
process type inherit from step
#43
eagmon
opened
7 months ago
0
implement `apply_schema` which merges two schemas while preferring the most specific type description
#42
prismofeverything
closed
7 months ago
0
When a composite is created, call check with the composite schema and state
#41
prismofeverything
opened
7 months ago
1
Allow emitter to connect at the top level
#40
prismofeverything
closed
6 months ago
0
fix initial_edge_state to reflect the change to inputs/outputs ports
#39
eagmon
closed
7 months ago
0
Process schema should be called interface
#38
eagmon
closed
7 months ago
0
Improve type system access
#37
eagmon
closed
7 months ago
0
fix: updated process repo name for import
#36
AlexPatrie
closed
8 months ago
1
`Composite` handling of disconnected ports
#35
eagmon
opened
8 months ago
1
Process schema is now defined in terms of "inputs/outputs" instead of singular "wires"
#34
prismofeverything
closed
8 months ago
0
feat: add `DatabaseEmitter` implementation class
#33
AlexPatrie
closed
8 months ago
0
Move infer() and reaction registry to bigraph_schema
#32
prismofeverything
closed
7 months ago
0
Use units for global time and intervals passed to process updates
#31
prismofeverything
opened
10 months ago
0
Offer option in Composite to warn on cycles in step graphs
#30
prismofeverything
opened
10 months ago
0
Make running the initial steps an additional method (not automatic during __init__)
#29
prismofeverything
opened
10 months ago
0
Schema is not being inferred from Step output ports
#28
eagmon
closed
7 months ago
0
Enable wire paths to be either lists or a single string in the case of single element paths
#27
prismofeverything
closed
7 months ago
0
Make global_time a state
#26
prismofeverything
closed
11 months ago
0
deserialize functions need to handle already deserialized values of their type
#25
prismofeverything
opened
1 year ago
0
copy.deepcopy(state) fails for some processes with objects that can't be pickled
#24
eagmon
closed
1 year ago
1
Useful warning messages
#23
eagmon
opened
1 year ago
0
types.access('process') returns as {'_type': 'edge'}?
#22
prismofeverything
closed
7 months ago
0
Returning updates from composites should return the updates to the bridge corresponding to the composite state
#21
prismofeverything
closed
1 year ago
0
Process registry and protocol registry
#20
eagmon
closed
1 year ago
0
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