BiosimulatorsProcess has hardcoded ports "input", "output", and "global_time".
set simulation time in BiosimulatorsProcess.next_update
test_biosimulators_process includes a custom topology argument that lets you connect input and output names. test_tellurium_process demos how to do this; it also demos how to set initial_state.
Expanding test cases by cloning Biosimulators_test_suite and pip installing, to access example models.
PR changes:
BiosimulatorsProcesshas hardcoded ports "input", "output", and "global_time".BiosimulatorsProcess.next_updatetest_biosimulators_processincludes a custom topology argument that lets you connect input and output names.test_tellurium_processdemos how to do this; it also demos how to setinitial_state.