feat: `GenericSimulatorProcess` object

vivarium-collective / vivarium-biosimulators

A Vivarium wrapper for BioSimulators

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Closed AlexPatrie closed 1 year ago

AlexPatrie commented 1 year ago

What does this PR do?

Implements an experimental GenericSimulatorProcess class that can theoretically connect any simulator/simulation process from any Python library with the vivarium.core.processes.Process() interface.
Implements an experimental ProcessLogger class that simply logs the outcome of the three main stages in the Process interface: Constructor, port_schema(), and next_update().

How have you tested these new features? Pytest, Unittest.

AlexPatrie commented 1 year ago

As I am experimenting with new changes, all checks continue to fail. Please note that this will be fixed.