Update use of `get_parameters_variables_for_simulation` to native model ids and data types

vivarium-collective / vivarium-biosimulators

A Vivarium wrapper for BioSimulators

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Update use of `get_parameters_variables_for_simulation` to native model ids and data types #9

Closed jonrkarr closed 3 years ago

jonrkarr commented 3 years ago

(a) Add two arguments to get_parameters_variables_for_simulation at vivarium_biosimulators/processes/biosimulators_process.py:L4

native_ids=True
native_data_types=True

(b) I renamed this function to get_parameters_variables_outputs_for_simulation. The new version has a fourth output for plots which Vivarium can ignore. This fourth output is only relevant to LEMS and XPP.

eagmon commented 3 years ago

Thanks! This has been added.