search

vivo-project / VIVO

VIVO is an extensible semantic web application for research discovery and showcasing scholarly work
http://vivoweb.org
BSD 3-Clause "New" or "Revised" License
203 stars 127 forks source link

Upgrade to Jena 5 (Epic) #3829

Open chenejac opened 1 year ago

chenejac commented 1 year ago

Is your feature request related to a problem? Please describe. There is a security issue/vulnerability with Jena 3 - https://mvnrepository.com/artifact/org.apache.jena/jena-core

Describe the solution you'd like

michel-heon commented 1 year ago

I am currently working on the transition from VIVO to Jena 4.7.0. (https://github.com/vivo-project/VIVO/issues/3829) Since version 3.17.0 jena-sdb is not supported anymore. I need your confirmation that VIVO will no longer support the use of SDB

Here is the list of Java classes affected by the removal of jena-sdb (Identified by a compilation error) Some of them will have to be redesigned while others will disappear.

Is this what we want? 

Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/api/SparqlUpdateApiController.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/BlankNodeFilteringGraph.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/DatasetWrapper.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/DifferenceGraph.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/RDFServiceDataset.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/RDFServiceDatasetGraph.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/RDFServiceGraph.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/RegeneratingGraph.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/SDBGraphGenerator.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/SparqlGraph.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/WebappDaoFactoryJena.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/WebappDaoFactorySDB.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/migration/rel17/RemoveObsoletePermissions.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/adapters/AbstractGraphDecorator.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/adapters/AbstractModelDecorator.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/adapters/AbstractOntModelDecorator.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/filter/FilteredResultSet.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/impl/jena/RDFServiceJena.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/impl/jena/sdb/RDFServiceFactorySDB.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/impl/jena/sdb/RDFServiceSDB.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/impl/sparql/RDFServiceSparqlHttp.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/reasoner/SimpleReasoner.java
Vitro/api/src/main/java/edu/cornell/mannlib/vitro/webapp/triplesource/impl/sdb/ContentTripleSourceSDB.java