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vivo-project / VIVO

VIVO is an extensible semantic web application for research discovery and showcasing scholarly work
http://vivoweb.org
BSD 3-Clause "New" or "Revised" License
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Mac M1 chip #3915

Closed chenejac closed 3 months ago

chenejac commented 8 months ago

Describe the bug VIVO can't be built on mac M1 chip

To Reproduce Steps to reproduce the behavior:

  1. mvn clean install
  2. See errors

Environment (please complete the following information):

Additional context This issue is open for the needs of discussion and finding exact issue (for instance which dependency should be updated).

gneissone commented 8 months ago

Failing tests during build:

[ERROR] Errors: 
[ERROR]   ProgramLoginTest.newPasswordEqualsOldPassword » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.newPasswordMissing » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.newPasswordNotNeeded » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.newPasswordTooLong » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.<clinit>:43->createUserAccount:102 » UnsatisfiedLink Can't load library: /var/folders/j0/j876tt4n21184ydf23m30q0m0000gq/T/jna--515919130/jna13933430274976356358.tmp
[ERROR]   ProgramLoginTest.noUsername » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.success » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.successWithNewPassword » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.unrecognizedUser » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   ProgramLoginTest.wrongPassword » NoClassDefFound Could not initialize class edu.cornell.mannlib.vitro.webapp.controller.authenticate.ProgramLoginTest
[ERROR]   AuthenticateTest.prepareUserAccounts:134->createUserFromUserInfo:212 » NoClassDefFound Could not initialize class de.mkammerer.argon2.Argon2Factory$Argon2Types

Example startup error if built skipping tests:

2023-10-09 16:06:45,612 ERROR [StartupManager] edu.cornell.mannlib.vitro.webapp.auth.policy.RootUserPolicy$Setup@41df5842 Threw unexpected error
java.lang.UnsatisfiedLinkError: Can't load library: /usr/local/tomcat/temp/jna--515919130/jna8069372811509798274.tmp
GarrettArm commented 8 months ago

Forgive me if this as a tangent, possibly pointing to the cause.

I would check Tomcat 9 Openjdk 11 first. Vivo does not like later versions.

I do Vivo development on a M1 Apple & x86 ubuntu. But the build I use is https://github.com/uncw-library/vivo-docker2/ . (The "stock" branch is the most stable & simplest branch.)

One thought is you could git clone my repo, checkout the "stock" branch, then docker build -t vivo-docker2/vivo ./vivo && docker build -t vivo-docker2/solr ./solr && docker compose up solr -d && sleep 30 && docker compose up -d And compare the dependencies within vivo-docker2/vivo (or vivo-docker2/solr) versus your machine.

gneissone commented 8 months ago

@GarrettArm Thanks, I will give the docker a shot if these issues can't sorted natively. I did try to build using OpenJDK 11 without success.

chenejac commented 7 months ago

We are keeping this ticket open for the discussion about any issue linked with running VIVO at M1 chip. If there is no any complaint in the next three months we will close this ticket as resolved.

gneissone commented 6 months ago

Per @milospp's comment on https://github.com/vivo-project/Vitro/pull/425, it's possible to install an x86_64 version of Java on an M1 machine (surprisingly). I was able to build and run VIVO once I did that. Not ideal, but a fine workaround for now.

For me...

$ /usr/libexec/java_home -V
Matching Java Virtual Machines (4):
    21 (arm64) "Homebrew" - "OpenJDK 21" /opt/homebrew/Cellar/openjdk/21/libexec/openjdk.jdk/Contents/Home
    20.0.2 (arm64) "Eclipse Adoptium" - "OpenJDK 20.0.2" /Library/Java/JavaVirtualMachines/temurin-20.jdk/Contents/Home
    17.0.9 (x86_64) "Eclipse Adoptium" - "OpenJDK 17.0.9" /Library/Java/JavaVirtualMachines/temurin-17.jdk/Contents/Home
    11.0.20.1 (arm64) "Homebrew" - "OpenJDK 11.0.20.1" /opt/homebrew/Cellar/openjdk@11/11.0.20.1/libexec/openjdk.jdk/Contents/Home

I changed Tomcat's JRE_HOME to the x86_64 option by setting it in /usr/local/tomcat/bin/setenv.sh export JAVA_HOME=$(/usr/libexec/java_home -v17)