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vjcitn / AHtestAzure

testing and benchmarking AnnotationHub on Azure
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Japan East #6

Open kozo2 opened 3 years ago

kozo2 commented 3 years ago 
> library(AHtestAzure)
Loading required package: tools
> report_comparison(location="Japan East")
/home/azureuser/.cache/R/BiocFileCache
  does not exist, create directory? (yes/no): yes
  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |===============================================================       |  89%Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) :
  bfcadd() failed; see warnings()
In addition: Warning messages:
1: download failed
  web resource path: ‘https://annotationhub.bioconductor.org/azure/2’
  local file path: ‘/home/azureuser/.cache/R/BiocFileCache/17b4e20148fe4_2’
  reason: OpenSSL SSL_read: Connection reset by peer, errno 104
2: bfcadd() failed; resource removed
  rid: BFC5
  fpath: ‘https://annotationhub.bioconductor.org/azure/2’
  reason: download failed
>
vjcitn commented 3 years ago

Thanks @kozo2 ... we'll have to follow up on this. Does

report_comparison(hosts="fetch") succeed?

kozo2 commented 3 years ago

@vjcitn Yes it succeeded. But report_comparison(hosts="Japan East") failed like

> library(AHtestAzure)
Loading required package: tools
> report_comparison(hosts="fetch")
  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

> report_comparison(hosts="Japan East")
  |======================================================================| 100%

Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) :
  bfcadd() failed; see warnings()
In addition: Warning messages:
1: download failed
  web resource path: ‘https://annotationhub.bioconductor.org/Japan East/5050’
  local file path: ‘/home/azureuser/.cache/R/BiocFileCache/17f23580c9b92_5050’
  reason: Bad Request (HTTP 400).
2: bfcadd() failed; resource removed
  rid: BFC10
  fpath: ‘https://annotationhub.bioconductor.org/Japan East/5050’
  reason: download failed
>
vjcitn commented 3 years ago

OK. Some changes are being made at the host, and we will be back in touch when it should work properly.

kozo2 commented 3 years ago

@vjcitn Thank you for updating. report_comparison(location="Japan East", target_file="./Japan_East.csv") worked well now. Japan_East.csv