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vkola-lab / tmi2022

A graph-transformer for whole slide image classification
MIT License
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Inquiry about args.dataset in build_graphs.py #2

Closed bryanwong17 closed 2 years ago

bryanwong17 commented 2 years ago

Hi @vkola-lab,

Thank you for your explanation! The earlier issue was already solved.

Could you explain how to define args.dataset in the build graphs.py file? Is it linked to the path to patches as you mentioned in the build_graphs.py's parser?

If it's true, does bags_list contain the patches list? Is the compute_feats function used to compute the features for every patch (doesn't matter whether it comes from the same or different WSI)? So that it will store a c_idx.txt, features.pt, adj_s.pt for every patch?

Please correct me if I am wrong. Thank you very much!

maxmal1 commented 7 months ago

Hi, do you have an answer to this?