Closed kavonrtep closed 1 year ago
Hello, I've got the same error "object 'new.regions.starts' not found". Have you found the source of the error and its solution since? Thanks
Hi, thanks for trying out TRASH. I've looked into it and couldn't replicate the issue. The "new.regions.starts" is now initialised and checked for when in use. Could you please upload the "fasta.file.name.out,txt" file created during the run in the "/assembly_out" directory?
Hi, Initially the fasta file I'd like to analyze contains 11 sequences and in the "/assembly_out" directory 11 "fasta.file.name.out.txt" have been created. There is also 9 "Regions_fasta.file.name_seq.csv" file created. Here a .csv file and its .out.txt : Regions_Col-CEN_PC.fasta_LeftPC2.csv LeftPC2.out.txt
And here a .out.txt file for which I have no .csv file corresponding : LeftPC3.out.txt
Thanks for the help
Hi, I have got a similar error:
Error in { : task 3 failed - "cannot open the connection"
Calls: %dopar% -> <Anonymous>
Execution halted
Any idea about how to solve it? Thanks in advance.
Hi, I have got a similar error:
Error in { : task 3 failed - "cannot open the connection" Calls: %dopar% -> <Anonymous> Execution halted
Any idea about how to solve it? Thanks in advance.
Hi, this error throws when one of the processes is interrupted and doesn't provide enough information for me to troubleshoot. Could you send the files generated by TRASH by the time this error occured? Other than the output visible in the console/log file, there are additional log files in the fasta_name.out folder generated by TRASH.
Please also indicate the command you are using, as it seems TRASH cannot access an output file / fasta file.
Hi, I have got a similar error:
Error in { : task 3 failed - "cannot open the connection" Calls: %dopar% -> <Anonymous> Execution halted
Any idea about how to solve it? Thanks in advance.
In my case, this issue disappeared after providing an absolute path to output directory (instead of a relative path)
Thank you @konczal. Yes, at this point the output directory needs to be an absolute path or no path at all. I've made this point in the manual.
It worked for me. Thanks a lot!
Hi, I was running your program on fasta sequence available here: https://data.narodni-repozitar.cz/general/datasets/8t29q-nfr77
getting thy following error: