vlothec / TRASH

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installation error #12

Closed Gon1976 closed 1 year ago

Gon1976 commented 1 year ago

Hi, I am trying to install TRASH in ubuntu using: ./TRASH_install.sh My R version is: R --version R version 4.3.1 (2023-06-16) -- "Beagle Scouts" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)

I have this error:

The downloaded source packages are in ‘/tmp/RtmpA1zeNU/downloaded_packages’ Installation paths not writeable, unable to update packages path: /usr/lib/R/library packages: boot, foreign, Matrix, nlme, spatial, survival path: /usr/local/lib/R/site-library packages: ggplot2 Old packages: 'stringdist', 'stringr' Error in library("Biostrings", quietly = TRUE, warn.conflicts = FALSE, : there is no package called ‘Biostrings’ In addition: Warning messages: 1: In install.packages(...) : installation of package ‘RCurl’ had non-zero exit status 2: In install.packages(...) : installation of package ‘GenomeInfoDb’ had non-zero exit status 3: In install.packages(...) : installation of package ‘Biostrings’ had non-zero exit status Execution halted

Can you help me thanks

Gon1976 commented 1 year ago

solved with: sudo apt -y install libcurl4-openssl-dev