Hi,
I am trying to install TRASH in ubuntu using:
./TRASH_install.sh
My R version is:
R --version
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
I have this error:
installing source package ‘RCurl’ ...
package ‘RCurl’ successfully unpacked and MD5 sums checked
using staged installation
checking for curl-config... no
Cannot find curl-config
ERROR: configuration failed for package ‘RCurl’
removing ‘/home/ggreif/TRASH/libs/RCurl’
ERROR: dependency ‘RCurl’ is not available for package ‘GenomeInfoDb’
removing ‘/home/ggreif/TRASH/libs/GenomeInfoDb’
ERROR: dependency ‘GenomeInfoDb’ is not available for package ‘Biostrings’
removing ‘/home/ggreif/TRASH/libs/Biostrings’
The downloaded source packages are in
‘/tmp/RtmpA1zeNU/downloaded_packages’
Installation paths not writeable, unable to update packages
path: /usr/lib/R/library
packages:
boot, foreign, Matrix, nlme, spatial, survival
path: /usr/local/lib/R/site-library
packages:
ggplot2
Old packages: 'stringdist', 'stringr'
Error in library("Biostrings", quietly = TRUE, warn.conflicts = FALSE, :
there is no package called ‘Biostrings’
In addition: Warning messages:
1: In install.packages(...) :
installation of package ‘RCurl’ had non-zero exit status
2: In install.packages(...) :
installation of package ‘GenomeInfoDb’ had non-zero exit status
3: In install.packages(...) :
installation of package ‘Biostrings’ had non-zero exit status
Execution halted
Hi, I am trying to install TRASH in ubuntu using: ./TRASH_install.sh My R version is: R --version R version 4.3.1 (2023-06-16) -- "Beagle Scouts" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)
I have this error:
The downloaded source packages are in ‘/tmp/RtmpA1zeNU/downloaded_packages’ Installation paths not writeable, unable to update packages path: /usr/lib/R/library packages: boot, foreign, Matrix, nlme, spatial, survival path: /usr/local/lib/R/site-library packages: ggplot2 Old packages: 'stringdist', 'stringr' Error in library("Biostrings", quietly = TRUE, warn.conflicts = FALSE, : there is no package called ‘Biostrings’ In addition: Warning messages: 1: In install.packages(...) : installation of package ‘RCurl’ had non-zero exit status 2: In install.packages(...) : installation of package ‘GenomeInfoDb’ had non-zero exit status 3: In install.packages(...) : installation of package ‘Biostrings’ had non-zero exit status Execution halted
Can you help me thanks