search

vlothec / TRASH

RepeatIdentifier
MIT License
50 stars 3 forks source link

some question about output file #17

Open HaoWangLYL opened 10 months ago

HaoWangLYL commented 10 months ago

hello, i have some qusetion about the output files:

  1. Why the sum of all consensus.count in Summary.of.repetitive.regions_assembly.fa.csv not equal to the lines counts of all.repeats.from.assembly.fa.csv?
  2. in the all.repeats.from.assembly.fa.csv, what is the first col "x" means ? and there are many monromer length was 2 or others nrever show in the all.consensus.count in Summary.of.repetitive.regions_assembly.fa.csv?
    1. Are there the exactly coords of each SRs in the all.repeats.from.assembly.fa.csv ? And how can i kown the exactly coords of each SR?

I am so sorry for asking so many questions and would appreciate your reply. thank you.