I have used TRASH in a genome where I had previously identified some large tandem repeats with repeat units of 730 bp, 900 bp and 2.6 kb, which are located in different chromosomes. In all cases, these repeats span over 30 kb. However, running TRASH I have only been able to find the region with the 730 bp repeats and not the other two.
I used: bash TRASH_run.sh --win 3000 --def --par 8
Hello,
I have used TRASH in a genome where I had previously identified some large tandem repeats with repeat units of 730 bp, 900 bp and 2.6 kb, which are located in different chromosomes. In all cases, these repeats span over 30 kb. However, running TRASH I have only been able to find the region with the 730 bp repeats and not the other two.
I used: bash TRASH_run.sh --win 3000 --def --par 8
Do you know what could be wrong here?
Many thanks.