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vloux / ProteoRE

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Pathways identification and coverage [KEGG] Pathways AND visualization of (differentially expressed) genes/proteins [KEGG] #223

Open yvandenb opened 5 years ago

yvandenb commented 5 years ago

Demande d'amélioration concernant l'output (feedback from training session in Paris) si l'on sait dans l'output le nbre d'Entrez gene ID ou UNiprot ID qui mappe sur les cartes on ne connait pas leur identité; serait-il possible de rajouter cette info par ex à gauche de la colonne "nb of Entrez gene ID mapped" insérer une colonne nommée "your Entrez geneID found in KEGG map"

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yvandenb commented 5 years ago

autre amélioration: mettre la partie "USerDoc" en cohérence avec l'output réel (intitulé et définition) : Output: The output is a tabular file (.tsv) with the following columns: Pathway_ID: KEGG pathway identifier (e.g. hsa04970) Description: name of the pathway as in KEGG Ratio IDs mapped/total IDs (%): pathway coverage in percentage nb KEGG genes IDs mapped in the pathway: number of KEGG genes from your list mapped to the KEGG pathway nb total of KEGG genes IDs present in the pathway: total number of KEGG genes present in the KEGG pathway