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vloux / ProteoRE

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HPA source files update and data manager #264

Closed yvandenb closed 4 years ago

yvandenb commented 4 years ago

Three Proteore tools relies on HPA resources (see http://proteore.org/u/proteore/p/data-sources-2) Get expression profiles by (normal or tumor) tissue/cell type [Human Protein Atlas] relies on " normal-" and pathology-tissues" dowloaded from HPA while Add expression data (RNAseq or Immuno-assays)[Human Protein Atlas] AND Build tissue-specific expression dataset [Human Protein Atlas](no input required) both rely on "ProteinAtlas" file However from the data manager, only two source files can be updated image although it is mentioned :"Once a database is selected, there's a second dropdown menu to select the specific file you want to update. for 'Human Protein Atlas': 'Normal tissue', 'Pathology' and 'Full Atlas'" Do you have an idea of what happened to the 'Full atlas' file ?

davidchristiany commented 4 years ago

the third option already exists, it has been commented in the code, I don't remember why but I will make it available in the next version of the data manager.