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vloux / ProteoRE

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venn_diagram error #284

Closed summerghw closed 3 years ago

summerghw commented 4 years ago

hi, i was trying to reanlasis "Annotating a protein list identified by LC-MS/MS experiments" in galaxy training materials. at last step, a error occur , Traceback (most recent call last): File "/home/galaxy/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/e744a43171ff/proteore_venn_diagram/venn_diagram.py", line 187, in <module> process( args ) File "/home/galaxy/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/e744a43171ff/proteore_venn_diagram/venn_diagram.py", line 171, in process write_summary(args.summary, args.input) File "/home/galaxy/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/e744a43171ff/proteore_venn_diagram/venn_diagram.py", line 151, in write_summary write_text_venn(data) File "/home/galaxy/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/e744a43171ff/proteore_venn_diagram/venn_diagram.py", line 116, in write_text_venn result = dict((k, v) for k, v in json_result["data"].iteritems() if v != []) AttributeError: 'dict' object has no attribute 'iteritems' could you help. thanks a lot

yvandenb commented 4 years ago

@summerghw : thx for your feedback; please could you share or send us the link of your history in which it happens so that we can reproduce this issue ?

summerghw commented 4 years ago

sorry for reply so late, this error apears when i try to repeat the "Annotating a protein list identified by LC-MS/MS experiments" and "Biomarker candidate identification" workflow in https://training.galaxyproject.org/ tool versiong was Venn diagram [JVenn] (Galaxy Version 2020.01.10) , i was trying to use this three files as input https://zenodo.org/record/3405119/files/Lacombe_2018.txt https://zenodo.org/record/3405119/files/Bredberg.txt https://zenodo.org/record/3405119/files/Mucilli.txt

yvandenb commented 4 years ago

Thx for reply: please again, can you share or send us the link of your history in which it happens so that we can reproduce this issue ? To share this link from your Galaxy Account: click on the "Share or Publish" menu from the History panel options, and copy/paste the link displayed here

yvandenb commented 3 years ago

no answer from @summerghw - unable to reproduce the bug on our side - issue closed