Parallelize plyr-dependent functions

vmikk / metagMisc

Miscellaneous functions for metagenomic analysis.

MIT License

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Open vmikk opened 7 years ago

vmikk commented 7 years ago

It should be quite easy to parallelize plyr-dependent functions to speed up processing of data.

Functions that could be modified to accept parallel option:

[x] phyloseq_mult_raref
[ ] phyloseq_sep_tax
[ ] parse_silva_tax_batch
[ ] parse_taxonomy_amptk_batch
[ ] parse_amplicon_table - just add ... as argument to silva_tax_parse_batch

vmikk commented 6 years ago

Finally, the first stepping stone! Multiple rarefaction was parallelized with plyr (decf7ae).