Closed MonicaSteffi closed 3 years ago
Dear Monica,
I suspect that something happened with the object structure during your manipulations.
(in general, it's not recommended to make such 'hard' assignments to S4 classes - e.g. ...@tax_table@.Data <- ...
)
Could you please try to recreate your phyloseq
object with:
new_phyloseq <- phyloseq(otu_table(amgut_genus), tax_table(amgut_genus), sample_data(amgut_genus))
phyloseq_sep_variable(new_phyloseq, "Intervention")
if there are any inconsistencies (e.g., duplicated names), it should let you know.
With kind regards, Vladimir
I hope you've solved the problem. I'm closing the issue for now. Feel free to re-open it if the problem remains.
Dear All,
I am trying to split the phyloseq after merged by genus.
I executed the following steps:
Then I tried to split the phyloseq data as follows:
But got the error as:
Kindly help me