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vogelwk / psi-pi

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RelationResultItem missing cleavage specificity and frame number #11

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
These seem to have got lost at some point. Although it is in theory
possible to determine the number of missed cleavages, this is not easy...
The frame number cannot be determined.

Original issue reported on code.google.com by dcre...@gmail.com on 28 Apr 2008 at 1:37

GoogleCodeExporter commented 8 years ago 
Frame number has moved to issue 24

Missed cleavages could be specified in the Peptide element:
<Peptide identifier="peptide_1_4" missedCleavages='n'

Where 'n' is -1 for a no enzyme search or any other case without a standard 
type of
enzyme.

Original comment by dcre...@gmail.com on 17 Jun 2008 at 1:03

GoogleCodeExporter commented 8 years ago 
Add missedCleavages='n' to PeptideEvidence positive integer.

Original comment by dcre...@gmail.com on 10 Jul 2008 at 3:32

GoogleCodeExporter commented 8 years ago 
Done.

"frame number" part of the issue has been solved already (frame and
TranslationTable_Ref attributes of PeptideEvidence).

Original comment by eisena...@googlemail.com on 10 Jul 2008 at 4:14