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voichek
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kmersGWAS
A library for running k-mers based GWAS
GNU General Public License v3.0
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Not producing phenotype_value.assoc.txt
#156
owensgl
opened
6 days ago
1
problemes with kmers_add_strand_information
#155
dosshra
closed
3 days ago
4
How to generate kmer P/A text file with all kmer using filter_kmers?
#154
dosshra
closed
3 weeks ago
1
how to solve"Couldn't find file: myfilename_output_kmc_canon.kmc_pre"
#153
jiangjiayi1018
closed
3 weeks ago
4
Building kinship matrix from KOC files
#152
viannam
closed
5 months ago
1
kmers_add_strand_information flag 1 2 3=0
#151
DNA-qiujunhui
closed
5 months ago
5
Using 51mer dump files generated by jellyfish
#150
dosshra
closed
6 months ago
1
no significant k-mer from flowering_time_arabidopsis
#149
yiwenwang25
closed
6 months ago
17
kmers_gwas.py
#148
zc-li
closed
7 months ago
1
Subset genotypes for Kinship matrix
#147
nirwan1265
closed
7 months ago
2
Error: No such file or directory: 'pheno.phenotypes_and_permutations'
#146
viannam
closed
8 months ago
10
question about kmers_add_strand_information
#145
Lucylalala
closed
11 months ago
5
Very few pass_threshold_10per and pass_threshold_10per
#144
nirwan1265
closed
11 months ago
2
Combine the information from two KMC runs to one list of kmers
#143
nirwan1265
closed
1 year ago
1
Results differ between kmersGWAS and GEMMA run separately on kmers produced earlier in the pipeline
#142
tommydavies
closed
11 months ago
6
Is it usual for kmc_canon.2 and kmc_all.2 to be empty after step 2?
#141
tommydavies
closed
1 year ago
1
Output file phenotype_value.assoc.txt
#140
SofiavanMoorsel
closed
1 year ago
14
Exploring kmers_table.table
#139
guidopuccetti
closed
1 year ago
5
kmers_table_to_bed
#138
xbarvazx
closed
1 year ago
6
Getting error when running k-mers gwas for snp-matirx
#137
vinod1981
closed
1 year ago
8
running SNP gwas with gemma/0.98 fails
#136
renhamm
closed
1 year ago
7
kmers from just one plate are associating with few traits
#135
vinod1981
closed
1 year ago
4
issues with kmers_add_strand_information
#134
vunguyen1907
closed
1 year ago
10
Can we include population structure data in GEMMA?
#133
renhamm
closed
1 year ago
1
kmers_add_strand_information can not finish
#132
vunguyen1907
closed
1 year ago
6
Step 1 issue
#131
vunguyen1907
closed
1 year ago
2
Question about list_kmers_found_in_multiple_samples paremeter mac
#130
slbai01
opened
1 year ago
1
kmers_add_strand_information
#129
fanmiaowang
closed
1 year ago
7
Confusing PAV table output - vcf
#128
renhamm
closed
1 year ago
12
phenotype_value.assoc.txt
#127
fanmiaowang
closed
1 year ago
4
Bug in filter_kmers?
#126
malemay
closed
1 year ago
1
error while running kmers_gwas.py
#125
dosshra
closed
1 year ago
8
kmer size 61
#124
zsdxgl
closed
1 year ago
4
reverse-complement kmers
#123
DanaSis
closed
1 year ago
1
making binary 0/1 PAV table usable in r
#122
renhamm
closed
1 year ago
2
list_kmers_found_in_multiple_samples "Couldn't find file"
#121
guidopuccetti
closed
2 years ago
2
how to generate kmer counts table
#120
zhoudreames
closed
2 years ago
2
error! fail to open .bim/.bed
#119
guidopuccetti
closed
2 years ago
8
General question: How kmers are indexed in fetched reads?
#118
vinod1981
closed
2 years ago
2
Difefrent subsets of a large panel
#117
vinod1981
closed
2 years ago
2
No output in pass_threshold_5per with even example data
#116
vinod1981
closed
2 years ago
2
add Docker container for kmersGWAS
#115
tayabsoomro
closed
2 years ago
4
How to create a Q-Q plot?
#114
soungalo
closed
2 years ago
3
the raw phenotype indeed influence the kmers passed the threshold。
#113
laserhsu
closed
2 years ago
3
GEMMA bslmm
#112
viannam
closed
2 years ago
2
Error When Running on Arabidopsis Flowering Time Example
#111
Daluser1
closed
2 years ago
4
KeyError: 'P1'
#110
JinkwanJo
closed
2 years ago
6
GWAS for tetraploid spp
#109
cdanmaigona
closed
2 years ago
1
Two questions about the KMC parameters
#108
laserhsu
closed
2 years ago
2
Why the kmers can't be filtered at the second step in permutaion?
#107
laserhsu
closed
2 years ago
10
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