For certain labextensions, which are bundled alongside their python packages as of JupyterLab 3, voila fails to find the bundled files. Notably this affects k3d 2.11.0: the files bundled with the package are not found. This causes voila instead to find these same packages from a fallback CDN.
I infer that this has happened due to the following output in the browser console:
Loading failed for the <script> with source “http://localhost:8866/voila/k3d.js”. localhost:8866:1:1
Falling back to https://cdn.jsdelivr.net/npm/ for k3d@2.11.0
Reproduce
Have voila, JupyterLab, k3d and plotly (versions above) installed via pip
I ran voila as voila postproc_notebook/demonstration.ipynb --VoilaConfiguration.file_whitelist="['.*']" --debug --enable_nbextensions=True (this to confirm it wasn't a permission error that caused the .js files to not be found)
For me it was enough to have a notebook with the following to trigger the above error messages in the browser:
import k3d
k3d.plot()
I believed this occurs because these packages in particular use hex-strings as filenames instead of the human-readable names that voila expects. This seems to work fine on jupyter-lab, but voila is unable to recognize files in this format.
e.g. in the k3d pypi package, /k3d-2.11.0/k3d/labextension/static/ contains the following files instead of the human-readable k3d.js voila might expect.
Note that jupyter-lab seems to work fine with the filenames being as such.
Expected behavior
On the surface level the behavior of the labextensions seems fine because the fallback CDN does work so the widgets function. Nevertheless, I would want to use the bundled versions of the labextensions as these are the latest version and prevent a callback to an external CDN.
Context
voila version: voila==0.2.16
Operating System and version: Ubuntu 20.04
Browser and version: Firefox 93.0 (64-bit) (but similar on Chrome)
Description
For certain labextensions, which are bundled alongside their python packages as of JupyterLab 3, voila fails to find the bundled files. Notably this affects
k3d 2.11.0: the files bundled with the package are not found. This causes voila instead to find these same packages from a fallback CDN.I infer that this has happened due to the following output in the browser console:
Reproduce
voila postproc_notebook/demonstration.ipynb --VoilaConfiguration.file_whitelist="['.*']" --debug --enable_nbextensions=True(this to confirm it wasn't a permission error that caused the .js files to not be found)I believed this occurs because these packages in particular use hex-strings as filenames instead of the human-readable names that voila expects. This seems to work fine on jupyter-lab, but voila is unable to recognize files in this format.
e.g. in the k3d pypi package,
/k3d-2.11.0/k3d/labextension/static/contains the following files instead of the human-readablek3d.jsvoila might expect.Note that jupyter-lab seems to work fine with the filenames being as such.
Expected behavior
On the surface level the behavior of the labextensions seems fine because the fallback CDN does work so the widgets function. Nevertheless, I would want to use the bundled versions of the labextensions as these are the latest version and prevent a callback to an external CDN.
Context
voila==0.2.16Jupyter Troubleshoot
WARNING: You are using pip version 20.2.3; however, version 21.3.1 is available. You should consider upgrading via the '/home/pbakker/.pyenv/versions/3.8.7/envs/jl/bin/python3.8 -m pip install --upgrade pip' command. $PATH: /home/pbakker/.pyenv/versions/jl/bin /home/pbakker/.pyenv/libexec /home/pbakker/.pyenv/plugins/python-build/bin /home/pbakker/.pyenv/plugins/pyenv-virtualenv/bin /home/pbakker/.pyenv/plugins/python-build/bin /home/pbakker/.pyenv/plugins/pyenv-virtualenv/bin /home/pbakker/.pyenv/shims /home/pbakker/.pyenv/bin /home/pbakker/.local/bin /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /usr/games /usr/local/games /snap/bin sys.path: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/bin /home/pbakker/.pyenv/versions/3.8.7/lib/python38.zip /home/pbakker/.pyenv/versions/3.8.7/lib/python3.8 /home/pbakker/.pyenv/versions/3.8.7/lib/python3.8/lib-dynload /home/pbakker/.pyenv/versions/3.8.7/envs/jl/lib/python3.8/site-packages /home/pbakker/eal-code/susipop sys.executable: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/bin/python3.8 sys.version: 3.8.7 (default, May 20 2021, 12:43:16) [GCC 9.3.0] platform.platform(): Linux-5.11.0-40-generic-x86_64-with-glibc2.29 which -a jupyter: /home/pbakker/.pyenv/versions/jl/bin/jupyter /home/pbakker/.pyenv/shims/jupyter pip list: Package Version Location ------------------- ---------------------------------------------------- ------------------------------ anyio 3.3.3 argon2-cffi 21.1.0 attrs 21.2.0 Babel 2.9.1 backcall 0.2.0 bleach 4.1.0 cairocffi 1.3.0 CairoSVG 2.5.2 certifi 2021.10.8 cffi 1.14.6 charset-normalizer 2.0.7 click 8.0.3 cssselect2 0.4.1 cycler 0.10.0 debugpy 1.5.0 decorator 5.1.0 deepdiff 5.5.0 defusedxml 0.7.1 dill 0.3.4 docutils 0.16 entrypoints 0.3 et-xmlfile 1.1.0 ffmpeg-python 0.2.0 filelock 3.0.12 future 0.18.2 idna 3.2 imageio 2.9.0 ipykernel 6.4.1 ipysheet 0.4.4 ipython 7.28.0 ipython-genutils 0.2.0 ipywidgets 7.6.3 jedi 0.18.0 Jinja2 3.0.2 json5 0.9.6 jsonschema 3.2.0 jupyter-client 6.1.12 jupyter-core 4.8.1 jupyter-server 1.11.1 jupyterlab 3.1.13 jupyterlab-pygments 0.1.2 jupyterlab-server 2.8.2 jupyterlab-widgets 1.0.2 k3d 2.11.0 kaleido 0.2.1 kiwisolver 1.3.2 llvmlite 0.36.0 MarkupSafe 2.0.1 matplotlib 3.4.3 matplotlib-inline 0.1.3 mistune 0.8.4 mixpanel 4.9.0 mpmath 1.2.1 nbclassic 0.3.2 nbclient 0.5.4 nbconvert 6.2.0 nbformat 5.1.3 nest-asyncio 1.5.1 networkx 2.6.3 notebook 6.4.4 numba 0.53.1 numpy 1.20.3 openpyxl 3.0.7 ordered-set 4.0.2 ovito 3.5.4 packaging 21.0 pandas 1.2.4 pandoc-include 0.7.3 pandocfilters 1.5.0 panflute 1.12.5 parso 0.8.2 pexpect 4.8.0 pickleshare 0.7.5 Pillow 8.2.0 pip 20.2.3 plotly 5.3.1 prometheus-client 0.11.0 prompt-toolkit 3.0.20 psutil 5.8.0 ptyprocess 0.7.0 pycparser 2.20 Pygments 2.10.0 pylatexenc 2.10 pypandoc 1.5 pyparsing 2.4.7 pyrsistent 0.18.0 PySide2 5.15.2 python-dateutil 2.8.2 pytz 2021.3 PyWavelets 1.1.1 PyYAML 5.4.1 pyzmq 22.3.0 rcpopcore 0.5.34.dev0+fe174be87425f872336a48054f4e5ccfa2239b5e requests 2.26.0 requests-unixsocket 0.2.0 scikit-image 0.18.1 scipy 1.6.3 Send2Trash 1.8.0 sentry-sdk 1.1.0 setuptools 49.2.1 Shapely 1.7.1 shiboken2 5.15.2 six 1.16.0 sniffio 1.2.0 susimetadata 0.5.0.dev0+702cba80076301bc915e28f205be2dc2af3b3925 susipop 0.5.39 /home/pbakker/eal-code/susipop susitk 0.6.5+fd307b7d3eef8287cba2e0ec5cd9beffa56f60be sympy 1.7.1 tenacity 8.0.1 terminado 0.12.1 testpath 0.5.0 tifffile 2021.10.10 tinycss2 1.1.0 tornado 6.1 tqdm 4.61.1 traitlets 5.1.0 traittypes 0.2.1 urllib3 1.26.7 voila 0.2.16 vtk 9.0.1 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.2.1 wheel 0.37.0 widgetsnbextension 3.5.1Command Line Output
/home/pbakker/.pyenv/versions/3.8.7/envs/jl/lib/python3.8/site-packages/traitlets/traitlets.py:2562: FutureWarning: --VoilaConfiguration.file_whitelist=['.*'] for containers is deprecated in traitlets 5.0. You can pass `--VoilaConfiguration.file_whitelist item` ... multiple times to add items to a list. [Voila] Looking for voila in /etc/jupyter [Voila] Looking for voila in /usr/local/etc/jupyter [Voila] Looking for voila in /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter [Voila] Looking for voila in /home/pbakker/.jupyter [Voila] Looking for voila in /home/pbakker/eal-code/susipop [Voila] using template: lab [Voila] template paths: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/lab /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/lab /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/base /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/base /home/pbakker/.local/share/jupyter /home/pbakker/.local/share/jupyter/voila/templates /home/pbakker/.local/share/jupyter/nbconvert/templates /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates /usr/local/share/jupyter /usr/local/share/jupyter/voila/templates /usr/local/share/jupyter/nbconvert/templates /usr/share/jupyter /usr/share/jupyter/voila/templates /usr/share/jupyter/nbconvert/templates [Voila] static paths: /home/pbakker/.local/share/jupyter/voila/templates/lab/static /home/pbakker/.local/share/jupyter/nbconvert/templates/lab/static /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/lab/static /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/lab/static /usr/local/share/jupyter/voila/templates/lab/static /usr/local/share/jupyter/nbconvert/templates/lab/static /usr/share/jupyter/voila/templates/lab/static /usr/share/jupyter/nbconvert/templates/lab/static /home/pbakker/.local/share/jupyter/voila/templates/base/static /home/pbakker/.local/share/jupyter/nbconvert/templates/base/static /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/base/static /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/base/static /usr/local/share/jupyter/voila/templates/base/static /usr/local/share/jupyter/nbconvert/templates/base/static /usr/share/jupyter/voila/templates/base/static /usr/share/jupyter/nbconvert/templates/base/static [Voila] Using /tmp to store connection files [Voila] Storing connection files in /tmp/voila_92yemngm. [Voila] Serving static files from /home/pbakker/.pyenv/versions/3.8.7/envs/jl/lib/python3.8/site-packages/voila/static. [Voila] Voilà is running at: http://localhost:8866/ [Voila] Paths used for configuration of notebook: /etc/jupyter/nbconfig/notebook.json [Voila] Paths used for configuration of notebook: /usr/local/etc/jupyter/nbconfig/notebook.json [Voila] Paths used for configuration of notebook: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter/nbconfig/notebook.d/ipysheet.json /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter/nbconfig/notebook.d/jupyterlab-plotly.json /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter/nbconfig/notebook.d/voila.json /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter/nbconfig/notebook.d/widgetsnbextension.json /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter/nbconfig/notebook.json [Voila] Paths used for configuration of notebook: /home/pbakker/.jupyter/nbconfig/notebook.json [Voila] Paths used for configuration of notebook: /etc/jupyter/serverconfig/notebook.json [Voila] Paths used for configuration of notebook: /usr/local/etc/jupyter/serverconfig/notebook.json [Voila] Paths used for configuration of notebook: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/etc/jupyter/serverconfig/notebook.json [Voila] Paths used for configuration of notebook: /home/pbakker/.jupyter/serverconfig/notebook.json [Voila] WARNING | Notebook demonstration.ipynb is not trusted [Voila] Found kernel python3 in /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/kernels [Voila] Template paths: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/lab /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/lab /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/base /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/base /home/pbakker/.local/share/jupyter /home/pbakker/.local/share/jupyter/voila/templates /home/pbakker/.local/share/jupyter/nbconvert/templates /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates /usr/local/share/jupyter /usr/local/share/jupyter/voila/templates /usr/local/share/jupyter/nbconvert/templates /usr/share/jupyter /usr/share/jupyter/voila/templates /usr/share/jupyter/nbconvert/templates [Voila] Applying preprocessor: TagRemovePreprocessor [Voila] Applying preprocessor: RegexRemovePreprocessor [Voila] Applying preprocessor: coalesce_streams [Voila] Applying preprocessor: HighlightMagicsPreprocessor [Voila] Applying preprocessor: CSSHTMLHeaderPreprocessor [Voila] Attempting to load template index.html.j2 [Voila] template_paths: /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/lab:/home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/lab:/home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates/base:/home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates/base:/home/pbakker/.local/share/jupyter:/home/pbakker/.local/share/jupyter/voila/templates:/home/pbakker/.local/share/jupyter/nbconvert/templates:/home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter:/home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/voila/templates:/home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbconvert/templates:/usr/local/share/jupyter:/usr/local/share/jupyter/voila/templates:/usr/local/share/jupyter/nbconvert/templates:/usr/share/jupyter:/usr/share/jupyter/voila/templates:/usr/share/jupyter/nbconvert/templates [Voila] Starting kernel (async): ['/home/pbakker/.pyenv/versions/3.8.7/envs/jl/bin/python3.8', '-m', 'ipykernel_launcher', '-f', '/tmp/voila_92yemngm/kernel-05d7eb09-dc78-4b5e-af11-2409d3f08fec.json'] [Voila] Connecting to: tcp://127.0.0.1:50819 [Voila] Connecting to: tcp://127.0.0.1:52963 [Voila] Kernel started: 05d7eb09-dc78-4b5e-af11-2409d3f08fec [Voila] Kernel args: {'kernel_name': 'python3', 'env': {'SHELL': '/bin/bash', 'SESSION_MANAGER': 'local/pbakker-ThinkPad-E14-Gen-2:@/tmp/.ICE-unix/1983,unix/pbakker-ThinkPad-E14-Gen-2:/tmp/.ICE-unix/1983', 'PYENV_HOOK_PATH': '/home/pbakker/.pyenv/pyenv.d:/usr/local/etc/pyenv.d:/etc/pyenv.d:/usr/lib/pyenv/hooks:/home/pbakker/.pyenv/plugins/pyenv-virtualenv/etc/pyenv.d', 'QT_ACCESSIBILITY': '1', 'COLORTERM': 'truecolor', 'PYENV_SHELL': 'bash', 'XDG_CONFIG_DIRS': '/etc/xdg/xdg-ubuntu:/etc/xdg', 'PYENV_ACTIVATE_SHELL': '1', 'XDG_MENU_PREFIX': 'gnome-', 'GNOME_DESKTOP_SESSION_ID': 'this-is-deprecated', 'SENTRY_ENVIRONMENT': 'production', 'LC_ADDRESS': 'nl_NL.UTF-8', 'GNOME_SHELL_SESSION_MODE': 'ubuntu', 'LC_NAME': 'nl_NL.UTF-8', 'SSH_AUTH_SOCK': '/run/user/1000/keyring/ssh', 'PYENV_VIRTUALENV_DISABLE_PROMPT': '1', 'XMODIFIERS': '@im=ibus', 'DESKTOP_SESSION': 'ubuntu', 'LC_MONETARY': 'nl_NL.UTF-8', 'SSH_AGENT_PID': '1941', 'PYENV_VERSION': 'jl', 'GTK_MODULES': 'gail:atk-bridge', 'PWD': '/home/pbakker/eal-code/susipop', 'XDG_SESSION_DESKTOP': 'ubuntu', 'LOGNAME': 'pbakker', 'XDG_SESSION_TYPE': 'x11', 'GPG_AGENT_INFO': '/run/user/1000/gnupg/S.gpg-agent:0:1', 'SUSIPOP': '/home/pbakker/eal-code/susipop/', 'XAUTHORITY': '/run/user/1000/gdm/Xauthority', 'WINDOWPATH': '2', 'HOME': '/home/pbakker', 'USERNAME': 'pbakker', 'SENTRY_DSN': 'https://4573f501f5944ec6939fc5f09c74a605@sentry.dev.rheocube.net/7', 'IM_CONFIG_PHASE': '1', 'LANG': 'en_US.UTF-8', 'LC_PAPER': 'nl_NL.UTF-8', 'USER_UUID': '1b70869c-cdeb-42e4-8318-cfd692284998', 'LS_COLORS': 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'application/vnd.jupyter.widget-view+json': {'version_major': 2, 'version_minor': 0, 'model_id': '0bdc5f3194814186b8f7fb4bd2aa0b42'}}, 'metadata': {}, 'transient': {}} [Voila] msg_type: status [Voila] content: {'execution_state': 'idle'} [Voila] Skipping non-executing cell 2 [Voila] Path ipysheet/extension.js served from /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbextensions/ipysheet/extension.js [Voila] Path jupyterlab-plotly/extension.js served from /home/pbakker/.pyenv/versions/3.8.7/envs/jl/share/jupyter/nbextensions/jupyterlab-plotly/extension.js [Voila] Initializing websocket connection /api/kernels/05d7eb09-dc78-4b5e-af11-2409d3f08fec/channels [Voila] Requesting kernel info from 05d7eb09-dc78-4b5e-af11-2409d3f08fec [Voila] Connecting to: tcp://127.0.0.1:47031 [Voila] activity on 05d7eb09-dc78-4b5e-af11-2409d3f08fec: status (busy) [Voila] activity on 05d7eb09-dc78-4b5e-af11-2409d3f08fec: status (idle) [Voila] Received kernel info: {'status': 'ok', 'protocol_version': '5.3', 'implementation': 'ipython', 'implementation_version': '7.28.0', 'language_info': {'name': 'python', 'version': '3.8.7', 'mimetype': 'text/x-python', 'codemirror_mode': {'name': 'ipython', 'version': 3}, 'pygments_lexer': 'ipython3', 'nbconvert_exporter': 'python', 'file_extension': '.py'}, 'banner': "Python 3.8.7 (default, May 20 2021, 12:43:16) \nType 'copyright', 'credits' or 'license' for more information\nIPython 7.28.0 -- An enhanced Interactive Python. 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