volkamerlab / KinaseFocusedFragmentLibrary

Subpocket-based fragmentation and recombination of kinase inhibitors
MIT License
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Some ligands can not be reconstructed #33

Closed AndreaVolkamer closed 6 months ago

AndreaVolkamer commented 1 year ago

While working on a reconstruction project (@kabu00002 and @PaulaKramer) found that the BRICS environments are overwritten in case a fragment contains to linker atoms.

Example in which we observed it: PDB code 5l4q. [more details follow]

After fixing this, we should provide also an updated 2023 version of KinFragLib.