Add examples / tutorials

[jaimergp]

Each person (@Koesed96, @Tiggha, @anniepham7) should come up with an example for their method and add that to docs/tutorials/. Each tutorial should have the following content:

• Introduction: why the chosen structures are interesting as a case study.
• Preparation: get the structures
• Alignment: use your method
• Analysis: visually inspect the superposed structures and report the RMSD, coverage, and mapped residues.

@pipaj97 will adapt this Jupyter Notebook template so it contains this outline and the rest will use that as a starting point. The resulting notebooks will be added to the docs using nbsphinx.

Check notebooks at our project TeachOpenCADD to see high-quality, user-ready notebooks look like ;)

[pipaj97]

I created a new PR for the template.

[pipaj97]

And maybe it is helping someone... The NGLview only works in jupyter notebook. I could not see the structures in vs code or jupyter lab.

[jaimergp]

Yep, for Jupyter Lab we need (yet another) plugin, because the JS backend is different. See here if you are curious (and disregard the strict version pinning, it should work now).

[jaimergp]

Template is now available in master under docs/tutorials! Use it for your upcoming PRs. Thanks Julian!