Open B-1991-ing opened 2 years ago
Dear megabit support team,
My two megabit command lines stopped after the 41 Hours running. Here, I pasted the error, log and command line of one running. Could you help me check what is the reason?
Error: megahit_lake_backup.err.txt
Log: log.txt
Command line: /services/tools/megahit/1.2.9/bin/megahit --presets meta-large --min-contig-len 1000 --k-min 27 --k-max 127 --k-step 10 --kmin-1pass --min-count 2 --no-mercy -t 30 -m 0.8 --mem-flag 2 -r ${se_fa} --out-dir ${megahit_out}
Thank you very much.
Best,
Bing
I already tried "--kmin-1pass" in my command line, why it still assembles from k27 instead of choosing a bigger Kmer?
Dear megabit support team,
My two megabit command lines stopped after the 41 Hours running. Here, I pasted the error, log and command line of one running. Could you help me check what is the reason?
Error: megahit_lake_backup.err.txt
Log: log.txt
Command line: /services/tools/megahit/1.2.9/bin/megahit --presets meta-large --min-contig-len 1000 --k-min 27 --k-max 127 --k-step 10 --kmin-1pass --min-count 2 --no-mercy -t 30 -m 0.8 --mem-flag 2 -r ${se_fa} --out-dir ${megahit_out}
Thank you very much.
Best,
Bing