I have problems with BIG assemblies with at least 750 million reads (with triplicates that's why it is big). Assemblies worked with also big assemblies with less reads (between 546 and 722 million reads)
I attached the log for the assembly of 750 million reads.
log.zip
I ran it with maximum RAM : 550GB and --cpus-per-task=40
Here is the message from slurm:
Slurm Job_id=26439056 Name=cap18 Failed, Run time 09:14:19, FAILED, ExitCode 249
SO IT IS NOT A OUT OF MEMORY ISSUE
I don't understand the problem because it worked with little kmers (so higher ressources requiered I think). It worked with an assembly of almost the same size ( 722 M).
I have problems with BIG assemblies with at least 750 million reads (with triplicates that's why it is big). Assemblies worked with also big assemblies with less reads (between 546 and 722 million reads)
I attached the log for the assembly of 750 million reads. log.zip
I ran it with maximum RAM : 550GB and --cpus-per-task=40 Here is the message from slurm: Slurm Job_id=26439056 Name=cap18 Failed, Run time 09:14:19, FAILED, ExitCode 249
SO IT IS NOT A OUT OF MEMORY ISSUE
I don't understand the problem because it worked with little kmers (so higher ressources requiered I think). It worked with an assembly of almost the same size ( 722 M).