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voutcn / megahit

Ultra-fast and memory-efficient (meta-)genome assembler
http://www.ncbi.nlm.nih.gov/pubmed/25609793
GNU General Public License v3.0
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Error with latest OS X Bioconda recipe #344

Open vinisalazar opened 1 year ago

vinisalazar commented 1 year ago

Hi,

I've recently updated my MegaHit OS X install with the latest Bioconda build (see the builds page, build h2ed8fcc).

I keep getting this error when running MegaHit with that build:

2022-11-14 18:40:14 - b'INFO  sorting/base_engine.cpp       :  172 - Start main loop...'
2022-11-14 18:40:14 - b'INFO  sorting/base_engine.cpp       :  186 - Lv1 scanning from bucket 0 to 2265'
2022-11-14 18:40:14 - b'INFO  sorting/base_engine.cpp       :  193 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0794'
2022-11-14 18:40:14 - Error occurs, please refer to /path/to/this/log/file.txt for detail

I couldn't pick up much from the error. When reverting back to the previous build (hfbae3c0), I don't get the error.

Please let me know if there's any more info I could provide, and thank you for your assistance.

Best, V

taylorreiter commented 1 year ago

Thank you for reporting this! This just happened to me as well and the log file had me stumped. Reverting also fixed for me.