I tried executing the read2sdbg on Mac (2.3 Quad-Core intel i5 w 16Gb RAM), but seems like the execution did not go through:
IN>> megahit_core read2sdbg --read_lib_file ERR3426146.fastq --o out --host_mem 0.9
------------------------------------------------------------------------------------------------
INFO sorting/base_engine.cpp : 148 - Preparing data...
INFO sequence/io/sequence_lib.cpp : 115 - Before reading, sizeof seq_package: 1649267441876
INFO sequence/io/sequence_lib.cpp : 117 - After reading, sizeof seq_package: 1649267441876
INFO sorting/read_to_sdbg_s1.cpp : 105 - 0 reads, 0 max read length, 0 total bases
INFO sorting/read_to_sdbg_s1.cpp : 109 - 2 words per substring
INFO sorting/read_to_sdbg_s1.cpp : 124 - Number of files for mercy candidate reads: 1
INFO sorting/base_engine.cpp : 153 - Preparing data... Done. Time elapsed: 0.0053
INFO sorting/base_engine.cpp : 156 - Preparing partitions and calculating bucket sizes...
zsh: killed megahit_core read2sdbg --read_lib_file ERR3426146.fastq --o out --host_mem 0.
Unfortunately I have no idea what is happening and how to continue... Is there any manual on specifically sdbg builder?
I tried executing the read2sdbg on Mac (2.3 Quad-Core intel i5 w 16Gb RAM), but seems like the execution did not go through:
Unfortunately I have no idea what is happening and how to continue... Is there any manual on specifically
sdbg
builder?Best regards, Fikrat