Stuck with exit code 1 for a while please help

[Sabrin2020]

I have tried different memory specifications but keeps get the same not informative error message every time, Can you please help me figure where does the error comes from?

megahit \
-1 $OUTPUT/mySampleFiltered_1P.fq.gz \
-2 $OUTPUT/mySampleFiltered_2P.fq.gz \
-r $OUTPUT/mySampleFiltered_1U.fq.gz,$OUTPUT/mySampleFiltered_2U.fq.gz \
--memory 0.85 \
--continue \
--min-contig-len 1000 \
--num-cpu-threads 4

9989@hpcl001 test_megahit]$ cat MEGAHIT1.err
2023-01-11 17:31:05 - MEGAHIT v1.2.9
2023-01-11 17:31:05 - Using megahit_core with POPCNT and BMI2 support
2023-01-11 17:31:05 - Convert reads to binary library
2023-01-11 17:34:17 - b'INFO  sequence/io/sequence_lib.cpp  :   77 - Lib 0 (/user/asga9989/Gills/2_anvio/megahit_results/test_megahit/mySampleFiltered_1P.fq.gz,/user/asga9989/Gills/2_anvio/megahit_results/test_megahit/mySampleFiltered_2P.fq.gz): pe, 79637954 reads, 140 max length'
2023-01-11 17:34:29 - b'INFO  sequence/io/sequence_lib.cpp  :   77 - Lib 1 (/user/asga9989/Gills/2_anvio/megahit_results/test_megahit/mySampleFiltered_1U.fq.gz): se, 5046931 reads, 140 max length'
2023-01-11 17:34:32 - b'INFO  sequence/io/sequence_lib.cpp  :   77 - Lib 2 (/user/asga9989/Gills/2_anvio/megahit_results/test_megahit/mySampleFiltered_2U.fq.gz): se, 1116831 reads, 140 max length'
2023-01-11 17:34:32 - b'INFO  utils/utils.h                 :  152 - Real: 207.4364\tuser: 58.5037\tsys: 3.3021\tmaxrss: 251972'
2023-01-11 17:34:32 - k-max reset to: 141
2023-01-11 17:34:32 - Start assembly. Number of CPU threads 16
2023-01-11 17:34:32 - k list: 21,29,39,59,79,99,119,141
2023-01-11 17:34:32 - Memory used: 486559648972
2023-01-11 17:34:32 - Extract solid (k+1)-mers for k = 21
2023-01-11 17:34:32 - Build graph for k = 21
2023-01-11 17:34:32 - Error occurs, please refer to /user/asga9989/Gills/2_anvio/megahit_results/test_megahit/megahit_out/log for detail
2023-01-11 17:34:32 - Command: /cm/shared/uniol/software/8.3/MEGAHIT/1.2.9-GCCcore-8.3.0/bin/megahit_core seq2sdbg --host_mem 486559648972 --mem_flag 1 --output_prefix /user/asga9989/Gills/2_anvio/megahit_results/test_megahit/megahit_out/tmp/k21/21 --num_cpu_threads 16 -k 21 --kmer_from 0 --input_prefix /user/asga9989/Gills/2_anvio/megahit_results/test_megahit/megahit_out/tmp/k21/21 --need_mercy; Exit code 1

[jvollme]

Did you look into the error log in "/user/asga9989/Gills/2_anvio/megahit_results/test_megahit/megahit_out/log",if there are any more Infos given there? Did you check if maybe you are just running out of memory during graph-building?

[Sabrin2020]

I believe it was cluster issue. Solved