voutcn / megahit

Ultra-fast and memory-efficient (meta-)genome assembler
http://www.ncbi.nlm.nih.gov/pubmed/25609793
GNU General Public License v3.0
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Running into a permission error while running a test data #356

Open marynjerey opened 1 year ago

marynjerey commented 1 year ago

(genome-assembly) [mchege@crcfe01 fastq]$ ~/.conda/envs/genome-assembly/bin/megahit -1 ERR2231568_1.fastqsanger.gz -2 ERR2231568_2.fastqsanger.gz -t 8 --k-min 21 --k-max 91 --k-step 12 -o megahit_result 2023-05-15 06:17:08 - MEGAHIT v1.2.9 2023-05-15 06:17:08 - Using megahit_core with POPCNT and BMI2 support Traceback (most recent call last): File "/afs/crc.nd.edu/user/m/mchege/.conda/envs/genome-assembly/bin/megahit", line 1038, in main() File "/afs/crc.nd.edu/user/m/mchege/.conda/envs/genome-assembly/bin/megahit", line 988, in main build_library() File "/afs/crc.nd.edu/user/m/mchege/.conda/envs/genome-assembly/bin/megahit", line 264, in checked_or_call func(*args, **kwargs) File "/afs/crc.nd.edu/user/m/mchege/.conda/envs/genome-assembly/bin/megahit", line 723, in build_library create_fifo('pe1', i, inpipe_cmd(opt.pe1[i])) File "/afs/crc.nd.edu/user/m/mchege/.conda/envs/genome-assembly/bin/megahit", line 710, in create_fifo os.mkfifo(fifo_path) PermissionError: [Errno 1] Operation not permitted