I ran megahit 1.2.9 and got the following graph with megahit_toolkit contig2fastg 141 final.contigs.fa:
Note the contig subgraphs I have highlighted in the red boxes - can I safely merge these? I am uncertain why they would have been generated as separate contigs. Thanks!!
Hi @voutcn and @aquaskyline,
I ran megahit 1.2.9 and got the following graph with![image](https://github.com/voutcn/megahit/assets/10245822/c3f6fe86-5fed-4ebf-b476-1914f2e43f70)
megahit_toolkit contig2fastg 141 final.contigs.fa
:Note the contig subgraphs I have highlighted in the red boxes - can I safely merge these? I am uncertain why they would have been generated as separate contigs. Thanks!!