voutcn / megahit

Ultra-fast and memory-efficient (meta-)genome assembler
http://www.ncbi.nlm.nih.gov/pubmed/25609793
GNU General Public License v3.0
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Multiple paired end fasta file question #371

Open g-raymo opened 3 months ago

g-raymo commented 3 months ago

Hello,

When multiple paired end files are provided as input, does megahit concatenate all forward, and reverse reads together? Alternatively are k-mers generated with each paired end file set in step-wise succession? This doesn't seem to be covered in detail in the manual.

Thanks!