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vpalombo / PANEV

PaNeV: an R package for a pathway-based network visualization
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Error in Panev network vizualization step #3

Open Sonali-Tayal opened 2 years ago

Sonali-Tayal commented 2 years ago

Hello, I used this code an year back and it was working without any error. I used the same script again 2 days back and it is showing an error at the last step of panev network vizualization. The error is as follows:

panev.network(in.file = "C:\misc phd work\predicted-latest\final.txt", out.file = "results", species = KEGG.species.hsa, FL = "FL.gene", levels = 2) Input file imported!

Gene list specified... Error in if (colnames(genelist) %in% c("entrezgene", "ensembl_gene_id", : the condition has length > 1

I have made all the datasets as asked in the github repository. I have also upgraded my R version from 4.1.1 to 4.2.0. I think it is showing an error due upgrade in the R version. Can you please help me with this?

qiz218591 commented 12 months ago

list <- panev.speciesCode(string = "hsa") No match found for the requested string! Hi, I have used the above 1st line code for extracting hsa and then I am getting result as NO match? PLease help me out with this? Let me know what mistake I am doing here.