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vpc-ccg / circminer

A sensitive and fast tool for circular RNA detection from RNA-Seq data
GNU General Public License v3.0
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annotate_transcript.py #15

Closed heartlncrna closed 2 years ago

heartlncrna commented 2 years ago

I’m testing your CircMiner using your examples. I ran into this error:

$ python ../scripts/annotate_transcript.py output.circ_report ref.gtf output.circ_report.annotated File "../scripts/annotate_transcript.py", line 7 <!DOCTYPE html> ^ SyntaxError: invalid syntax

The above error appear on both Python 2.7.15 and Python 3.9.6.

Would you mind telling me how to fix this error?

Thank you very much.

rsoltani97 commented 2 years ago

I couldn't reproduce the error. However, it is a SyntaxError pointing to an empty line, and I guess it relates to an indentation issue.

heartlncrna commented 2 years ago

Thanks. I solved the issue. I somehow downloaded the GitHub HTML file.