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vpc-ccg / genion

GENe fusION
MIT License
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empty result file #3

Open ssscj opened 2 years ago

ssscj commented 2 years ago

Hi, thanks for developing Genion. I use Genion to analyse a small dataset of ~14000 reads. The system log file says, " Normal reads: 14188 Homologous chimeric reads: 1 Fusion candidate chimeric reads: 20" but the output tsv file, fail file and log file are empty. I set the parameter --min-support to 1, but got the empty files again. So how could I get the reads ID, position and other information of the failed fusion candidates ? Thank you.

f0t1h commented 2 years ago

Thank you for using Genion. I will look into this as soon as possible.

Are you using Genion via conda? Also, is the dataset you've used public?

ssscj commented 2 years ago

I installed Genion from source. And the dataset is from our cooperator, so sorry I could not provide you with the dataset. The dataset is generated on Mus musculus, and I use the reference and annotation of GRCm38 downloaded from ensembl. Thanks.

f0t1h commented 2 years ago

Hi @ssscj can you try running again with the latest commit?