I am interested to use your tool. In your example, Is the backbone.06.smallbubble.gfa the final graph of assembly? and does it include duplications and haplotigs that can be used for subsequent possible phasing?
I was wondering whether polishing with short reads (which happens as part of HASLR) will remove duplications or not; especially at .gfa stage/files.
Hi
I am interested to use your tool. In your example, Is the backbone.06.smallbubble.gfa the final graph of assembly? and does it include duplications and haplotigs that can be used for subsequent possible phasing?
I was wondering whether polishing with short reads (which happens as part of HASLR) will remove duplications or not; especially at .gfa stage/files.