Clean raw data prior to assembly

vpc-ccg / haslr

A fast tool for hybrid genome assembly of long and short reads

GNU General Public License v3.0

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Clean raw data prior to assembly #36

Open gargkritika opened 1 year ago

gargkritika commented 1 year ago

I am planning to use Haslr for my project. I have ~100X illumina short read data and ~15X long read data from oxford nanopore. I was wondering does Haslr perform any cleanup prior to assembly or we should first clean the raw data and then use Haslr for genome assembly.

Thank you Best regards Kritika