Closed Krannich479 closed 4 years ago
I think this line is missing a little detail:
https://github.com/vpc-ccg/pamir/blob/9bf2c24217b6f43590e45335f36c62a41f52aab1/Snakefile#L1426
should contain:
return config["path"] + "/" + config["raw-data"] + "/" + config["input"][wildcards.sample][0]
An additional "/" shouldn't have any negative effect (at least in UNIX). But if you leave it out then it will break the relative path if the path parameter within config.yaml doesn't end with and "/" (like in your README example).
I think this line is missing a little detail:
https://github.com/vpc-ccg/pamir/blob/9bf2c24217b6f43590e45335f36c62a41f52aab1/Snakefile#L1426
should contain:
return config["path"] + "/" + config["raw-data"] + "/" + config["input"][wildcards.sample][0]An additional "/" shouldn't have any negative effect (at least in UNIX). But if you leave it out then it will break the relative path if the path parameter within config.yaml doesn't end with and "/" (like in your README example).