check if mrsfast index exists

vpc-ccg / pamir

Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals

BSD 3-Clause "New" or "Revised" License

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check if mrsfast index exists #53

Open Krannich479 opened 4 years ago

Krannich479 commented 4 years ago

This addresses issue https://github.com/vpc-ccg/pamir/issues/50 :

mrsfast --index reference.fa

is invoked if the reference.fa.index is not present. However, some rule in the pipeline generates the reference.fa.fai anyway. This might be redundant.