provide CRAM support - Githubissues

vpc-ccg / pamir

Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals

BSD 3-Clause "New" or "Revised" License

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Closed calkan closed 4 years ago

calkan commented 5 years ago

this should be relatively easy. While sorting input BAM/CRAM file, just add "-T reference.fasta" to 'samtools view' @yenyilin @fhach

fhach commented 4 years ago

Fixed. @f0t1h Reference this issue during merge of 2.0.0.