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vpc-ccg / pamir

Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals
BSD 3-Clause "New" or "Revised" License
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update samtools command line #8

Closed calkan closed 4 years ago

calkan commented 5 years ago

update samtools command line to use the "-o" parameter in view. The current pamir implementation uses a very old version, that would not support CRAMs. @yenyilin @fhach

fhach commented 4 years ago

Fixed. @f0t1h Please reference this issue during merge of 2.0.0.